Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
ESCA rs35946424 chr16:1506463 A/G 1.25E-7 181 13.18 13.73 4 KM Plot
ESCA rs35973002 chr16:1519126 G/A 1.39E-8 183 13.37 13.1 4 KM Plot
ESCA rs36091838 chr16:1508736 T/C 1.18E-7 180 13.33 13.73 4 KM Plot
ESCA rs36122610 chr3:46022833 G/A 0 183 13.37 12.6 0.8 KM Plot
ESCA rs36124273 chr1:3700430 G/T 1.75E-12 183 13.03 16.4 2.27 KM Plot
ESCA rs370475123 chr15:65605253 TATTGAGTGCTTACTTTACACC/T 6.28E-5 182 12.87 16.53 4.08 KM Plot
ESCA rs371681979 chr7:111250952 A/T 0 183 13.35 14.5 0.8 KM Plot
ESCA rs3735165 chr7:150068371 T/C 5.46E-6 181 12.8 15.4 12.4 KM Plot
ESCA rs375231407 chr8:8607256 TTTG/TTTGTTG 2.21E-8 175 13.35 15.9 4.57 KM Plot
ESCA rs3757423 chr7:150067714 A/G 8.84E-6 184 12.4 15.4 12.77 KM Plot
ESCA rs3757424 chr7:150067679 C/A 5.95E-6 182 12.77 15.4 12.4 KM Plot
ESCA rs3757425 chr7:150067640 A/C 5.95E-6 182 12.77 15.4 12.4 KM Plot
ESCA rs377197424 chr16:1523475 A/C 7.18E-9 181 13.37 13.42 4 KM Plot
ESCA rs3781394 chr10:126726885 G/A 4.26E-5 183 13.37 7.73 7.87 KM Plot
ESCA rs3796830 chr4:10019135 G/C 1.39E-5 183 13.07 13.87 7.93 KM Plot